title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Inhibidoras_M {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/MA_HC_Inhibidoras_M.RData")
```ENSG00000006652
Statistics of ENSG00000006652 meta-analisys
kable(sig.genes.df['ENSG00000006652',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000006652 | IFRD1 | -0.8345835 | -0.5641426 | -0.2937018 | 4.34e-05 | 0.0303986 | 0.8615889 | 0.1379826 | 0 | 0 | 1 | 0.0284426 | 0.2738726 | 1.546031 | 2 | 2 | non | 0.7776765 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000006652_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000006652_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000006652_INFLUENCE.png")
ENSG00000025293
Statistics of ENSG00000025293 meta-analisys
kable(sig.genes.df['ENSG00000025293',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000025293 | PHF20 | -1.287179 | -0.8609791 | -0.4347796 | 7.51e-05 | 0.8737935 | 0.3499072 | 0.2174527 | 0 | 0 | 1 | 0.0400746 | 0.3858776 | 1.39713 | 2 | 2 | GSE163577 | 0.7719624 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000025293_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000025293_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000025293_INFLUENCE.png")
ENSG00000074590
Statistics of ENSG00000074590 meta-analisys
kable(sig.genes.df['ENSG00000074590',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000074590 | NUAK1 | 0.3891335 | 0.7865411 | 1.183949 | 0.0001048 | 0.0049495 | 0.9439128 | 0.2027627 | 0 | 0 | 1 | 0.0470818 | 0.4533488 | 1.327147 | 2 | 2 | non | 0.8658078 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000074590_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000074590_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000074590_INFLUENCE.png")
ENSG00000081189
Statistics of ENSG00000081189 meta-analisys
kable(sig.genes.df['ENSG00000081189',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000081189 | MEF2C | 0.9015079 | 1.639081 | 2.376654 | 1.33e-05 | 0.6863896 | 0.4073951 | 0.3763197 | 0 | 0 | 1 | 0.0161798 | 0.1557951 | 1.791026 | 2 | 2 | GSE163577 | 0.7296793 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000081189_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000081189_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000081189_INFLUENCE.png")
ENSG00000109046
Statistics of ENSG00000109046 meta-analisys
kable(sig.genes.df['ENSG00000109046',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000109046 | WSB1 | -2.072544 | -1.375093 | -0.6776418 | 0.0001114 | 0.7781001 | 0.3777228 | 0.3558489 | 0 | 0 | 1 | 0.04754 | 0.4577617 | 1.32294 | 2 | 2 | Study43,GSE163577 | 0.8457703 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000109046_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000109046_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000109046_INFLUENCE.png")
ENSG00000112902
Statistics of ENSG00000112902 meta-analisys
kable(sig.genes.df['ENSG00000112902',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000112902 | SEMA5A | 0.713735 | 1.440004 | 2.166273 | 0.0001019 | 1.262203 | 0.2612345 | 0.3705522 | 0.0578339 | 20.77345 | 1.262203 | 0.0470818 | 0.4533488 | 1.327147 | 2 | 2 | Study43,GSE163577 | 0.9261046 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000112902_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000112902_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000112902_INFLUENCE.png")
ENSG00000122507
Statistics of ENSG00000122507 meta-analisys
kable(sig.genes.df['ENSG00000122507',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000122507 | BBS9 | 0.5499513 | 1.06037 | 1.570789 | 4.67e-05 | 0.0156392 | 0.9004787 | 0.2604226 | 0 | 0 | 1 | 0.0284426 | 0.2738726 | 1.546031 | 2 | 2 | non | 0.6621688 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000122507_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000122507_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000122507_INFLUENCE.png")
ENSG00000136111
Statistics of ENSG00000136111 meta-analisys
kable(sig.genes.df['ENSG00000136111',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000136111 | TBC1D4 | 0.539809 | 1.029339 | 1.51887 | 3.77e-05 | 0.1170467 | 0.7322599 | 0.249765 | 0 | 0 | 1 | 0.0267974 | 0.2580314 | 1.571907 | 2 | 2 | non | 0.742079 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000136111_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000136111_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000136111_INFLUENCE.png")
ENSG00000154529
Statistics of ENSG00000154529 meta-analisys
kable(sig.genes.df['ENSG00000154529',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000154529 | CNTNAP3B | 0.4326564 | 0.7848923 | 1.137128 | 1.26e-05 | 0.1666815 | 0.6830781 | 0.1797155 | 0 | 0 | 1 | 0.0161798 | 0.1557951 | 1.791026 | 2 | 2 | non | 0.7349904 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000154529_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000154529_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000154529_INFLUENCE.png")
ENSG00000155849
Statistics of ENSG00000155849 meta-analisys
kable(sig.genes.df['ENSG00000155849',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000155849 | ELMO1 | 0.4324044 | 0.777974 | 1.123544 | 1.02e-05 | 0.4559874 | 0.4995053 | 0.1763143 | 0 | 0 | 1 | 0.0161798 | 0.1557951 | 1.791026 | 2 | 2 | GSE163577 | 0.6312209 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000155849_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000155849_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000155849_INFLUENCE.png")
ENSG00000155886
Statistics of ENSG00000155886 meta-analisys
kable(sig.genes.df['ENSG00000155886',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000155886 | SLC24A2 | 0.5279619 | 0.9721232 | 1.416284 | 1.79e-05 | 0.0176007 | 0.8944563 | 0.226617 | 0 | 0 | 1 | 0.019082 | 0.1837396 | 1.719377 | 2 | 2 | non | 0.5723133 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000155886_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000155886_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000155886_INFLUENCE.png")
ENSG00000162415
Statistics of ENSG00000162415 meta-analisys
kable(sig.genes.df['ENSG00000162415',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000162415 | ZSWIM5 | 0.6140405 | 0.9298844 | 1.245728 | 0 | 0.0204102 | 0.8863975 | 0.1611478 | 0 | 0 | 1 | 2.25e-05 | 0.0002166 | 4.647885 | 2 | 2 | non | 0.6198745 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000162415_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000162415_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000162415_INFLUENCE.png")
ENSG00000163872
Statistics of ENSG00000163872 meta-analisys
kable(sig.genes.df['ENSG00000163872',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000163872 | YEATS2 | 0.3885428 | 0.7794937 | 1.170445 | 9.31e-05 | 0 | 0.9998736 | 0.1994684 | 0 | 0 | 1 | 0.0467402 | 0.4500602 | 1.330309 | 2 | 2 | non | 0.5622952 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000163872_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000163872_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000163872_INFLUENCE.png")
ENSG00000169554
Statistics of ENSG00000169554 meta-analisys
kable(sig.genes.df['ENSG00000169554',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000169554 | ZEB2 | 1.189176 | 2.000483 | 2.81179 | 1.3e-06 | 0.0116036 | 0.9142177 | 0.4139399 | 0 | 0 | 1 | 0.0028721 | 0.0276554 | 2.5418 | 2 | 2 | non | 0.6461128 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000169554_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000169554_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000169554_INFLUENCE.png")
ENSG00000172292
Statistics of ENSG00000172292 meta-analisys
kable(sig.genes.df['ENSG00000172292',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000172292 | CERS6 | 0.7691128 | 1.437396 | 2.105679 | 2.49e-05 | 0.4773349 | 0.489632 | 0.340967 | 0 | 0 | 1 | 0.0236142 | 0.2273804 | 1.626827 | 2 | 2 | GSE163577 | 0.6040794 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000172292_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000172292_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000172292_INFLUENCE.png")
ENSG00000184226
Statistics of ENSG00000184226 meta-analisys
kable(sig.genes.df['ENSG00000184226',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000184226 | PCDH9 | 0.9467364 | 1.30535 | 1.663964 | 0 | 0.213739 | 0.6438525 | 0.1829696 | 0 | 0 | 1 | 0 | 0 | 8.381733 | 2 | 2 | GSE163577 | 0.5228561 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000184226_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000184226_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000184226_INFLUENCE.png")
ENSG00000187164
Statistics of ENSG00000187164 meta-analisys
kable(sig.genes.df['ENSG00000187164',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000187164 | SHTN1 | 0.4246815 | 0.8275828 | 1.230484 | 5.68e-05 | 0.6939632 | 0.4048196 | 0.2055657 | 0 | 0 | 1 | 0.0322903 | 0.3109223 | 1.490928 | 2 | 2 | GSE163577 | 0.6923611 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000187164_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000187164_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000187164_INFLUENCE.png")
ENSG00000189043
Statistics of ENSG00000189043 meta-analisys
kable(sig.genes.df['ENSG00000189043',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000189043 | NDUFA4 | -0.6222076 | -0.4227309 | -0.2232541 | 3.27e-05 | 0.6699404 | 0.4130724 | 0.1017757 | 0 | 0 | 1 | 0.0267974 | 0.2580314 | 1.571907 | 2 | 2 | GSE163577 | 0.8047728 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000189043_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000189043_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000189043_INFLUENCE.png")
ENSG00000198947
Statistics of ENSG00000198947 meta-analisys
kable(sig.genes.df['ENSG00000198947',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000198947 | DMD | -2.378632 | -1.613517 | -0.8484015 | 3.58e-05 | 0.0725194 | 0.7877032 | 0.390372 | 0 | 0 | 1 | 0.0267974 | 0.2580314 | 1.571907 | 2 | 2 | non | 0.6106549 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000198947_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000198947_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000198947_INFLUENCE.png")
ENSG00000251562
Statistics of ENSG00000251562 meta-analisys
kable(sig.genes.df['ENSG00000251562',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000251562 | MALAT1 | 0.6756415 | 0.8057467 | 0.9358519 | 0 | 0.0293792 | 0.8639065 | 0.0663814 | 0 | 0 | 1 | 0 | 0 | 29.24725 | 2 | 2 | non | 0.7264076 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000251562_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000251562_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/M/plots/ENSG00000251562_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 16:12:45 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2